---
name: "csb-hhsearch"
section: "1"
platform: "linux"
package: "csb"
version: "1.2.5+dfsg-10"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/csb-hhsearch"
---

# csb-hhsearch(1)

Python bindings for the HHsearch program

## NAME

csb-hhsearch - Python bindings for the HHsearch program

## DESCRIPTION

usage: csb-hhsearch \[-h\] \[-b BINARY\] \[-c CPU\] **-d** DATABASE query \[query ...\]

Python bindings for the HHsearch program. Capable of executing multiple HHsearch jobs in parallel.

### positional arguments:

- query

  query HMM file(s)

### optional arguments:

- **-h**, **--help**

  show this help message and exit

- **-b** BINARY, **--binary** BINARY

  full path to the HHsearch binary (default=hhsearch)

- **-c** CPU, **--cpu** CPU

  maximum degree of parallelism (default=4)

- **-d** DATABASE, **--database** DATABASE

  the subject (database) HMM file

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.