csb-embd1

Sharpening of em maps by non-negative blind deconvolution

Overview

usage: csb-embd [-h] [-s PSF_SIZE] [-o OUTPUT] [-i ITERATIONS]

: [-f OUTPUT_FREQUENCY] [-v] mapfile

Sharpening of EM maps by non-negative blind deconvolution. For details see: Hirsch M, Schoelkopf B and Habeck M (2010) A New Algorithm for Improving the Resolution of Cryo-EM Density Maps.

positional arguments:

mapfile: Input Cryo EM file in CCP4 MRC format

optional arguments:

-h, --help: show this help message and exit

-s PSF_SIZE, --psf-size PSF_SIZE: size of the point spread function (default=15)

-o OUTPUT, --output OUTPUT: output directory of the sharpened maps (default=.)

-i ITERATIONS, --iterations ITERATIONS: number of iterations (default=1000)

-f OUTPUT_FREQUENCY, --output-frequency OUTPUT_FREQUENCY: create a map file each f iterations (default=50)

-v, --verbose: verbose mode (default=False)