NAME
createChemistryHeader - Create a SAM header with PacBio sequencing chemistry information
DESCRIPTION
usage: getChemistryHeader.py [-h] [--debug] --bas_files BAS_FILES
- [BAS_FILES ...]
-
input_alignment_file output_header_file
createChemistryHeader creates a SAM header that contains the chemistry information used by Quiver.
positional arguments:
- input_alignment_file
-
A SAM or BAM file produced by BLASR.
- output_header_file
-
Name of the SAM or BAM header file that will be created with chemistry information loaded.
optional arguments:
- -h, --help
-
show this help message and exit
- --debug
-
Output detailed log information. (default: False)
- --bas_files BAS_FILES [BAS_FILES ...]
-
The bas or bax files containing the reads that were aligned in the input_alignment_file. Also can be a fofn of bas or bax files. (default: None)
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.