NAME
convertSamples - convert or normalize MCMC expression samples
SYNOPSIS
convertSamples -a <action> -o <outFileName> [OPTIONS] [sampleFile]
DESCRIPTION
Converts or normalizes MCMC expression samples.
-
[sampleFile] should contain transposed MCMC samples.
OPTIONS
--help
-
Show this help information.
--Nmap=<Nmap>
-
Total number of aligned reads. Or a normalization constant, when normalizing.
-a <action> , --action=<action>
-
Action to perform options:
-
T2R - theta to rpkm R2T - rpkm to theta T2RL - theta to log-rpkm C2R - counts to rpkm R2C - rpkm 2 counts NORM - normalize (samples are multiplied by Nmap) LOGNORM - log+normalize (samples are multiplied by Nmap and logged).
-o <outFileName> , --outFile=<outFileName>
-
Name of the output file.
-t <trInfoFileName> , --trInfoFile=<trInfoFileName>
-
File containing transcript information.
-v , --verbose
-
Verbose output. (default: Off)