NAME
contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords
DESCRIPTION
contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole chromosome coords in a GTF, GFF, or BED file
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contig_to_chr_coords.py <format_flag> <seq_contig.md> <junctions.bed|transcripts.gff|transcripts.gtf>
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for help use --help