---
name: "contigOverlaps"
section: "1"
platform: "linux"
package: "metabat"
version: "2.15-4+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/contigOverlaps"
---

# contigOverlaps(1)

ContigOverlaps nosha

## NAME

contigOverlaps - ContigOverlaps nosha

## SYNOPSIS

**contigOverlaps** *\<options\> firstAssemblyBams.fofn secondAssemblyBams.fofn* \[ ... \]

## OPTIONS

- **--help**

  print out this message

- **--percentIdentity**

  arg  The minimum end-to-end % identity of qualifying reads (default: 97)

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.