consensusFinder1
Consensus finder
Usage
consensusFinder input_fasta_file
[options]
Options
-
-l -
pattern length
-
-p -
p-value for finding the significant strings
-
-d -
delta to find the relevant strings
-
-s -
starting position
-
-e -
ending position
-
-m -
no. of mismatches to consider while finding neighbours
-
-c -
string to consider for analysis
-
-n -
specify the number of consensus patterns to store
-
-t -
print the histogram
Additional documentation
An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.