NAME
consensusfinder - consensus finder
SYNOPSIS
consensusFinder input_fasta_file [options]
OPTIONS
- -l
-
pattern length
- -p
-
p-value for finding the significant strings
- -d
-
delta to find the relevant strings
- -s
-
starting position
- -e
-
ending position
- -m
-
no. of mismatches to consider while finding neighbours
- -c
-
string to consider for analysis
- -n
-
specify the number of consensus patterns to store
- -t
-
print the histogram
AUTHORS
AUGUSTUS was written by M. Stanke, O. Keller, S. König, L. Gerischer and L. Romoth.
ADDITIONAL DOCUMENTATION
An exhaustive documentation can be found in the file /usr/share/augustus/README.TXT.