NAME
compare_genomes.py - find methylation in nanopore reads
DESCRIPTION
usage: compare_genomes.py [-h] --bed1 BED1 --bed2 BED2 [-g GENOME_ALIGNMENT]
-
[-v]
Compare methylation between two genomes by probabilities of methylation for aligned positions
optional arguments:
- -h, --help
-
show this help message and exit
- --bed1 BED1
-
bed file 1 with verbose output from make_bed.py
- --bed2 BED2
-
bed file 2 with verbose output from make_bed.py
- -g GENOME_ALIGNMENT, --genome_alignment GENOME_ALIGNMENT
-
an xmfa file from mauve (if absent, alignments assumed to be to the same reference genome)
- -v, --version
-
print version