---
name: "combineKmers"
section: "1"
platform: "linux"
package: "seer"
version: "1.1.4-8+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/combineKmers"
---

# combineKmers(1)

basic algorithm to combine kmer counts across samples This program belongs to seer(1) (Sequence Element (kmer) Enrichment Analysis).

## NAME

combineKmers - basic algorithm to combine kmer counts across samples

This program belongs to [seer(1)](/seer/1.md) (Sequence Element (kmer) Enrichment Analysis).

## DESCRIPTION

Basic algorithm to combine kmer counts across samples

## OPTIONS

### Required options:

- **-r** \[ **--samples** \] arg

  file with tab separated sample name and kmer file

- **-o** \[ **--output** \] arg

  output file prefix

### Other options:

- **--min\_samples** arg (=1)

  minimum number of samples kmer must occur in to be printed

- **-h** \[ **--help** \]

  full help message

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.