---
name: "collapse_partials"
section: "1"
platform: "linux"
package: "pinfish"
version: "0.1.0+ds-4+b8"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/collapse_partials"
---

# collapse\_partials(1)

Collection of tools to annotate genomes using long read transcriptomics data

## NAME

collapse\_partials - Collection of tools to annotate genomes using long read transcriptomics data

## DESCRIPTION

### Usage of collapse\_partials:

- **-M**

  Discard monoexonic transcripts.

- **-U**

  Discard transcripts which are not oriented.

- **-V**

  Print out version.

**-d** int

-

  Internal exon boundary tolerance. (default 5)

**-e** int

-

  Three prime exons boundary tolerance. (default 30)

**-f** int

-

  Five prime exons boundary tolerance. (default 5000)

- **-h**

  Print out help message.

**-prof** string

-

  Write out CPU profiling information.

**-t** int

-

  Number of cores to use. (default 4)

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.