---
name: "codonw-cai"
section: "1"
platform: "linux"
package: "codonw"
version: "1.4.4-8"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/codonw-cai"
---

# codonw-cai(1)

calculate Codon Adaptation Index (CAI)

## NAME

codonw-cai - calculate Codon Adaptation Index (CAI)

## SYNOPSIS

**codonw-cai** *inputfile* *outputfile* *bulkoutputfile* \<options\>

## DESCRIPTION

**codonw-cai** is a shortcut to accessing the [**codonw**(1)](/codonw/1.md) executable, with the 'calculate Codon Adaptation Index (CAI)' option (-cai) preselected, i.e.

- codonw -cai ...

  The command line arguments follow the order of arguments in **codonw** itself.

## SEE ALSO

[**codonw**(1)](/codonw/1.md)