---
name: "cnvkit-import-theta"
section: "1"
platform: "linux"
package: "cnvkit"
version: "0.9.12-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/cnvkit-import-theta"
---

# cnvkit-import-theta(1)

Convert THetA output to a BED-like, CNVkit-like tabular format. Equivalently, use the THetA results file to convert CNVkit .cns segments to integer copy number calls.

## NAME

cnvkit\_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.

    Equivalently, use the THetA results file to convert CNVkit .cns segments to\
     integer copy number calls.

## DESCRIPTION

usage: cnvkit.py import-theta \[-h\] \[--ploidy PLOIDY\] \[-d DIRECTORY\]

-

  tumor\_cns theta\_results

### positional arguments:

-

  tumor\_cns theta\_results

### options:

- **-h**, **--help**

  show this help message and exit

- **--ploidy** PLOIDY

  Ploidy of normal cells. \[Default: 2\]

- **-d** DIRECTORY, **--output-dir** DIRECTORY

  Output directory name.