NAME
cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.
Equivalently, use the THetA results file to convert CNVkit .cns segments to
integer copy number calls.
DESCRIPTION
usage: cnvkit.py import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]
-
tumor_cns theta_results
positional arguments:
-
tumor_cns theta_results
options:
- -h, --help
-
show this help message and exit
- --ploidy PLOIDY
-
Ploidy of normal cells. [Default: 2]
- -d DIRECTORY, --output-dir DIRECTORY
-
Output directory name.