NAME
cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.
DESCRIPTION
usage: cnvkit.py breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment
positional arguments:
- filename
-
Processed sample coverage data file (*.cnr), the output of the 'fix' sub-command.
- segment
-
Segmentation calls (.cns), the output of the 'segment' command).
options:
- -h, --help
-
show this help message and exit
- -m MIN_PROBES, --min-probes MIN_PROBES
-
Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1]
- -o FILENAME, --output FILENAME
-
Output table file name.