NAME
cnvkit_bintest - Test for single-bin copy number alterations.
DESCRIPTION
usage: cnvkit.py bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT]
-
cnarray
positional arguments:
- cnarray
-
Bin-level log2 ratios (.cnr file), as produced by 'fix'.
options:
- -h, --help
-
show this help message and exit
- -s FILENAME, --segment FILENAME
-
Segmentation calls (.cns), the output of the 'segment' command).
- -a ALPHA, --alpha ALPHA
-
Significance threhold. [Default: 0.005]
- -t, --target
-
Test target bins only; ignore off-target bins.
- -o OUTPUT, --output OUTPUT
-
Output filename.