---
name: "cmtk-destripe"
section: "1"
platform: "linux"
package: "cmtk"
version: "3.3.1p2+dfsg-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/cmtk-destripe"
---

# cmtk-destripe(1)

Destripe volume image data.

## NAME

destripe - Destripe volume image data.

## SYNOPSIS

**destripe** InputImage OutputImage

## DESCRIPTION

This program corrects stripe artifacts in acquired image stacks which can result from between-slice intensity scale differences.

## OPTIONS

### Global Toolkit Options (these are shared by all CMTK tools)

- **--help**

  Write list of basic command line options to standard output.

- **--help-all**

  Write complete list of basic and advanced command line options to standard output.

- **--wiki**

  Write list of command line options to standard output in MediaWiki markup.

- **--man**

  Write man page source in 'nroff' markup to standard output.

- **--version**

  Write toolkit version to standard output.

- **--echo**

  Write the current command line to standard output.

- **--verbose-level** *\<integer\>*

  Set verbosity level.

- **--verbose**, **-v**

  Increment verbosity level by 1 (deprecated; supported for backward compatibility).

- **--threads** *\<integer\>*

  Set maximum number of parallel threads (for POSIX threads and OpenMP).

### Slice Orientation

- **--slice-axis**

  Define slice direction axis: this is the through-slice direction of the acquisition. Supported values: "guess-from-input", "axial", "sagittal", "coronal", "slice-x", "slice-y", "slice-z", where the default is "guess-from-input", or use one of the following:

  - **--guess-from-input**

    Guess from input image **\[This is the default\]**

  - **--axial**, **-a**

    Sliced axial images

  - **--sagittal**, **-s**

    Sliced sagittal images

  - **--coronal**, **-c**

    Sliced coronal images

  - **--slice-x**, **-x**

    Sliced along x axis

  - **--slice-y**, **-y**

    Sliced along y axis

  - **--slice-z**, **-z**

    Sliced along z axis

- **--kernel-fwhm** *\<double\>*

  Gaussian kernel full width at half maximum (FWHM) in units of slice indexes. **\[Default: 1\]**

- **--kernel-radius** *\<integer\>*

  Truncate kernel radius to this many samples. By default, kernel width is determined to limit approximation error. **\[Default: 0\]**

- **--write-float**

  Write output image in floating point representation. By default, write using input image pixel data type.

## AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

## LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

## BUGS

Report bugs at http://nitrc.org/projects/cmtk/

## ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.