---
name: "cmtk-avg_adm"
section: "1"
platform: "linux"
package: "cmtk"
version: "3.3.1p2+dfsg-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/cmtk-avg_adm"
---

# cmtk-avg\_adm(1)

Average using ADM

## NAME

avg\_adm - Average using ADM

## SYNOPSIS

avg\_adm \[options\] list0 \[list1 ...\]

## DESCRIPTION

Compute average-shape average-intensity images and deformation maps using an active deformation model.

## OPTIONS

### Global Toolkit Options (these are shared by all CMTK tools)

- **--help**

  Write list of basic command line options to standard output.

- **--help-all**

  Write complete list of basic and advanced command line options to standard output.

- **--wiki**

  Write list of command line options to standard output in MediaWiki markup.

- **--man**

  Write man page source in 'nroff' markup to standard output.

- **--version**

  Write toolkit version to standard output.

- **--echo**

  Write the current command line to standard output.

- **--verbose-level** *\<integer\>*

  Set verbosity level.

- **--verbose**, **-v**

  Increment verbosity level by 1 (deprecated; supported for backward compatibility).

- **--threads** *\<integer\>*

  Set maximum number of parallel threads (for POSIX threads and OpenMP).

### Main Options

- **--label**, **-l**

  Label mode (as opposed to grey)

- **--set-padding** *\<float\>*

  Set padding value in input files **\[Default: disabled\]**

- **--replace-padding** *\<float\>*

  Replace padding value in input files **\[Default: disabled\]**

- **--pad-out** *\<double\>*, **-p** *\<double\>*

  Padding value for output file **\[Default: disabled\]**

- **--jacobian**, **-j**

  Average Jacobian determinants of deformations.

- **--auto-scale**, **-a**

  Auto-scale image intensities

- **--char**

  Output is 8 bits, signed \[default: automatic\]

- **--byte**

  Output is 8 bits, unsigned

- **--short**

  Output is 16 bits, signed

- **--ushort**

  Output is 16 bits, unsigned

- **--int**

  Output is 32 bits signed

- **--float**

  Output is 32 bits floating point

- **--double**

  Output is 64 bits floating point

- **--no-scale-model**, **-S**

  Exclude scale from statistical deformation model

- **--no-ref-model**, **-R**

  Exclude reference coordinate frame from deformation model

- **--no-ref-data**, **-r**

  Exclude reference data from averaging

- **--output** *\<string\>*, **-o** *\<string\>*

  Output file name \[FORMAT:\]path **\[Default: NONE\]**

- **--input-warp** *\<string\>*, **-I** *\<string\>*

  Input file name for average warp **\[Default: NONE\]**

- **--output-warp** *\<string\>*, **-O** *\<string\>*

  Output file name for average warp **\[Default: NONE\]**

- **--with-affine**, **-A**

  Include affine component of first warp in output

- **--nn**

  Use nearest neigbor interpolation

- **--cubic**

  Use tri-cubic interpolation

- **--replace-from** *\<string\>*

  Replace from pattern

- **--replace-to** *\<string\>*

  Replace to pattern

## AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

## LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

## BUGS

Report bugs at http://nitrc.org/projects/cmtk/

## ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.