cmtk-asegment1
Atlas-based segmentation
Usage
asegment TargetImage
AtlasImage
AtlasLabels
OutputImage
Overview
Register a target image to an atlas, using affine followed by nonrigid B-spline registration, then reformat the atlas label map to the target image.
Options
Global Toolkit Options (these are shared by all CMTK tools)
-
--help -
Write list of basic command line options to standard output.
-
--help-all -
Write complete list of basic and advanced command line options to standard output.
-
--wiki -
Write list of command line options to standard output in MediaWiki markup.
-
--man -
Write man page source in 'nroff' markup to standard output.
-
--xml -
Write command line syntax specification in XML markup (for Slicer integration).
-
--version -
Write toolkit version to standard output.
-
--echo -
Write the current command line to standard output.
-
--verbose-level <integer> -
Set verbosity level.
-
--verbose, -v -
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
-
--threads <integer> -
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
-
--fast, -f -
Fast mode.
Acknowledgments
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)
- Debian 10 (Buster)
- Debian 9 (Stretch)
- Debian 8 (Jessie)
- Debian 7 (Wheezy)