---
name: "cluster_gff"
section: "1"
platform: "linux"
package: "pinfish"
version: "0.1.0+ds-4+b8"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/cluster_gff"
---

# cluster\_gff(1)

Collection of tools to annotate genomes using long read transcriptomics data

## NAME

cluster\_gff - Collection of tools to annotate genomes using long read transcriptomics data

## DESCRIPTION

### Usage of cluster\_gff:

- **-V**

  Print out version.

**-a** string

-

  Write clusters in tabular format in this file.

**-c** int

-

  Minimum cluster size. (default 10)

**-d** int

-

  Exon boundary tolerance. (default 10)

**-e** int

-

  Terminal exons boundary tolerance. (default 30)

- **-h**

  Print out help message.

**-p** float

-

  Minimum isoform percentage. (default 1)

**-prof** string

-

  Write out CPU profiling information.

**-t** int

-

  Number of cores to use. (default 4)

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.