---
name: "chromostitch.pl"
section: "1"
platform: "linux"
package: "murasaki-common"
version: "1.68.6-14"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/chromostitch.pl"
---

# chromostitch.pl(1)

Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like murasaki

## NAME

chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like murasaki

## SYNOPSIS

chromostitch.pl \[options\] \<stitch file\> \<chromosome1 chromosome2 ... \>

- Options:

  - \--sort sorts everything

  - \--output=\<file\> altnerate way of specifying an output file

  ## PARAMETERS

- **stitch file** output file (overwrites)

  - **chromosome1 chromosome2 ...** List of chromosome input files

  - B--output=\<file\> Alternate way of specifying an output file

  - B--sort Always sort EVERYTHING. (Allows for nicely sorted lists from sloppy input of filenames from like multiple directories of \*.gbk or something)

  ## DESCRIPTION

Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like murasaki