---
name: "change_paired_read_orientation"
section: "1"
platform: "linux"
package: "grinder"
version: "0.5.4-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/change_paired_read_orientation"
---

# change\_paired\_read\_orientation(1)

Reverses the orientation of each paired-end FASTA sequence

## NAME

change\_paired\_read\_orientation - Reverses the orientation of each paired-end FASTA sequence

## DESCRIPTION

### Usage:

-

  change\_paired\_read\_orientation \<in\_fasta\> \<out\_fasta\> change\_paired\_read\_orientation **--help** change\_paired\_read\_orientation **--man** change\_paired\_read\_orientation **--usage** change\_paired\_read\_orientation **--version**

### Required arguments:

-

  \<in\_fasta\>

-

  FASTA file containing the reads to re-orient.

-

  \<out\_fasta\>

-

  Output FASTA file where to write the reads.

## SEE ALSO

**grinder**(7), [**grinder**(1)](/grinder/1.md), [**average\_genome\_size**(1)](/average_genome_size/1.md) and [**change\_paired\_read\_orientation**(1)](/change_paired_read_orientation/1.md).