bustools1

Usage

Overview

bustools 0.43.2

Where <CMD> can be one of:

sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file allowlist Generate an on-list from a BUS file capture Capture records from a BUS file text Convert a binary BUS file to a tab-delimited text file fromtext Convert a tab-delimited text file to a binary BUS file extract Extract FASTQ reads correspnding to reads in BUS file compress Compress a BUS file decompress Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information

Running bustools <CMD> without arguments prints usage information for <CMD>

Usage: bustools <CMD> [arguments] ..

Where <CMD> can be one of:

sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file allowlist Generate an on-list from a BUS file capture Capture records from a BUS file text Convert a binary BUS file to a tab-delimited text file fromtext Convert a tab-delimited text file to a binary BUS file extract Extract FASTQ reads correspnding to reads in BUS file compress Compress a BUS file decompress Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information

Running bustools <CMD> without arguments prints usage information for <CMD>