br_bioflat1
Obda flat file indexer
Usage
Search:
br_bioflat.rb [--search]
[options ...]
br_bioflat.rb [--search]
[--location
DIR]
[--dbname
DBNAME]
[options ...]
[KEYWORDS]
Create index:
br_bioflat.rb [--create]
[--location
DIR]
[--dbname
DBNAME]
[{--format
genbank | embl | fasta}]
[options ...]
[--files
FILES ...]
Update index:
br_bioflat.rb [--update]
[--location
DIR]
[--dbname
DBNAME]
[options ...]
[--files
FILES ...]
Show namespaces:
br_bioflat.rb [--show-namespaces]
[--location
DIR]
[--dbname
DBNAME]
[DIR/DBNAME]
br_bioflat.rb [--show-namespaces]
[--format=CLASS]
br_bioflat.rb [--show-namespaces]
[--files
file]
Overview
This manual page documents briefly the br_bioflat.rb.
br_bioflat.rb is an OBDA flat file indexer.
Options
-
--search -
Search a database for keywords.
-
--namespace --name -
Only valid with the --search option. Set the search namespace. You can set this option multiple times to specify more than one namespace.
-
--create -
Create an index.
-
--location -
Specify the directory.
-
--dbname -
Specify the name of the database.
-
--primary --secondary -
Set the primary and secondarynamespace of the index. Default primary/secondary namespaces depend on the format of the flatfiles. Only valid with the --create option.
-
--add-secondary -
Add secondary namespaces to the default specification. You can use this option many times. Only valid with the --create option.
-
--update -
Update an index
-
--sort -
Sort an index. You can set this to a path to an external sorting program, or BUILTIN to use the builtin sort module. This option is only valid with --create (or --update) and --type flat options.
-
--renew -
Re-read all flatfiles and update whole index. This option is only valid with the --update option.
-
--show-namespaces -
Display the namespaces for an index file.
Releases
8 releases since Debian 3.1 (Sarge); the text changed 6 times.