br_biofetch1
Biofetch client
Usage
br_biofetch.rb [-s
server]
[db]
[id]
[style]
[format]
Overview
This manual page documents briefly the br_biofetch.rb.
br_biofetch.rb is a very simple biofetch client. You can connect to a biofetch server and retrieve database entries including sequence information.
Options
-
-s -
Specify the URL of the BioFetch CGI (default is http://bioruby.org/cgi-bin/biofetch.rb)
-
-e -
Use the EBI server at http://www.ebi.ac.uk/cgi-bin/dbfetch
-
-r -
Use the BioRuby server at http://bioruby.org/cgi-bin/biofetch.rb
db-
Database name. This includes options like refseq, genbank, embl, swissprot, etc. This option depends on which biofetch server you are using.
id-
entry id
style-
´raw´ or ´html´ (default is ´raw´)
format-
Output format ('default, 'fasta', 'etc')
Releases
8 releases since Debian 3.1 (Sarge); the text changed 6 times.