---
name: "bppalnscore"
section: "1"
platform: "linux"
package: "bppsuite"
version: "2.4.1-7"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bppalnscore"
---

# bppalnscore(1)

Bio++ alignment scoring

## NAME

bppalnscore - Bio++ alignment scoring

## SYNOPSIS

**bppalnscore \[options\]**

## AVAILABILITY

All UNIX flavors

## DESCRIPTION

bppalnscore compares two alignment and compute corresponding column scores. Scores can be output to a text file, and/or used to generate a site selection to be output as a Mase file.

## OPTIONS

You should refer to 'info bppsuite' or to the online manual of bppsuite for a complete list of available options.

- \--noninteractive

  generates output for redirection in a file.

- param=file

  reads a file for loading options

## AUTHOR

Bio++ Development Team.