---
name: "bppalnoptim"
section: "1"
platform: "linux"
package: "physamp"
version: "1.1.0-5"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bppalnoptim"
---

# bppalnoptim(1)

Sequence alignment optimization according to the number of sequences vs. number of sites trade-off

## NAME

bppalnoptim - Sequence alignment optimization according to the number of sequences vs. number of sites trade-off

## SYNOPSIS

**bppalnoptim \[options\]**

## AVAILABILITY

All UNIX flavors

## DESCRIPTION

bppalnoptim samples sequences from an alignment in order to maximize the number of sites with a given minimal coverage.

## OPTIONS

You should refer to 'info physamp' or to the online manual of physamp for a complete list of available options.

- \--noninteractive=yes

  generates output for redirection into a file.

- param=file

  reads a file for loading options

## AUTHOR

Julien Y. Dutheil.