---
name: "bp_tree2pag"
section: "1p"
platform: "linux"
package: "bioperl"
version: "1.7.8-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bp_tree2pag"
---

# bp\_tree2pag(1p)

convert Bio::TreeIO parseable format trees to pagel format

## NAME

bp\_tree2pag - convert Bio::TreeIO parseable format trees to pagel format

## SYNOPSIS

```
 bp_tree2pag -if nexus -i file.nexus > file.pag
 # OR pipe in through STDIN, and use newick format instead
 cat file.newick | bp_tree2pag -if newick > file.nh
 # OR specify an output and input
 bp_tree2pag -o file.pag -i file.newick
```

## DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files.  Be warned that pagel format only really supports a single tree per file so.  Also Pagel parsing is not yet available in bioperl.