Reference

bp_tree2pag(1p)

convert Bio::TreeIO parseable format trees to pagel format

NAME

bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS

 bp_tree2pag -if nexus -i file.nexus > file.pag
 # OR pipe in through STDIN, and use newick format instead
 cat file.newick | bp_tree2pag -if newick > file.nh
 # OR specify an output and input
 bp_tree2pag -o file.pag -i file.newick

DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.

History