---
name: "bp_process_sgd"
section: "1p"
platform: "linux"
package: "bioperl"
version: "1.7.8-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bp_process_sgd"
---

# bp\_process\_sgd(1p)

Massage SGD annotation flat files into a version suitable for the Generic Genome Browser

## NAME

bp\_process\_sgd.pl - Massage SGD annotation flat files into a version suitable for the Generic Genome Browser

## SYNOPSIS

```
  % bp_process_sgd.pl chromosomal_features.tab > yeast.gff
```

## DESCRIPTION

This script massages the SGD sequence annotation flat files located at ftp://genome-ftp.stanford.edu/pub/yeast/data\_dump/feature/chromosomal\_features.tab into a version of the GFF format suitable for display by the generic genome browser.

To use this script, get the SGD chromosomal\_features.tab file from the FTP site listed above, and run the following command:

```
  % bp_process_sgd.pl chromosomal_features.tab > yeast.gff
```

The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following command:

```
  % bulk_load_gff.pl -d <databasename> yeast.gff
```

## SEE ALSO

Bio::DB::GFF, bulk\_load\_gff.pl, load\_gff.pl

## AUTHOR

Lincoln Stein, lstein@cshl.org

Copyright (c) 2002 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.  See DISCLAIMER.txt for disclaimers of warranty.