---
name: "bp_parse_hmmsearch.pl"
section: "1p"
platform: "linux"
package: "libbio-searchio-hmmer-perl"
version: "1.7.3-2"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bp_parse_hmmsearch.pl"
---

# bp\_parse\_hmmsearch.pl(1p)

parse single/multiple HMMSEARCH results file(s) with different output options

## NAME

bp\_parse\_hmmsearch - parse single/multiple HMMSEARCH results file(s) with\
                   different output options

## SYNOPSIS

bp\_parse\_hmmsearch \[--po\] \[--ps\] -s hmmsearch\_file

bp\_parse\_hmmsearch \[--po\] \[--ps\] -m index\_file

## DESCRIPTION

### Mandatory Options:

```
  -s  HMMSEARCH file to parse.
  -m  INDEX file that contains a list of HMMSEARCH files for multiple
      parsing.
```

### Special Options:

```
  --po    Print only the hits that have positive scores.
  --ps    Print the total of positive scores found.
  --help  Show this documentation.
```

## FEEDBACK

### Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

```
  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists
```

### Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

```
  https://github.com/bioperl/bioperl-live/issues
```

## AUTHOR

```
  Mauricio Herrera Cuadra <mauricio at open-bio.org>
```