---
name: "bp_extract_feature_seq"
section: "1p"
platform: "linux"
package: "bioperl"
version: "1.7.8-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bp_extract_feature_seq"
---

# bp\_extract\_feature\_seq(1p)

extract the corresponding sequence for a specified feature type

## NAME

bp\_extract\_feature\_seq - extract the corresponding sequence for a specified feature type

## SYNOPSIS

bp\_extract\_feature\_seq \[--format FORMAT\] \[--feature CDS\] \[--output FILE\] \[--input\] FILE

## DESCRIPTION

This script will extract the sequence for all the features you specify.

## OPTIONS

- **-i**, **--input**

  Specifies the sequence file to be read.

- **--format**

  Format of the file specified by **--input**. If not given, it will try to guess the correct format from the file extension.

- **--feature**

  Feature to be extracted. By default, it extracts the CDS feature.

- **-o**, **--output**

  File where the extracted features will be saved. If not specified, STDOUT is used.

## FEEDBACK

### Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

```
  L<bioperl-l@bioperl.org>                  - General discussion
  L<http://bioperl.org/wiki/Mailing_lists>  - About the mailing lists
```

### Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

```
  L<https://github.com/bioperl/bioperl-live/issues>
```

## AUTHOR

```
 Jason Stajich <jason-at-bioperl-dot-org>
```