bowtie2-inspect1
Wrapper for bowtie2-inspect-* index
Usage
bowtie2-inspect [options]
*
<bt2_base>
Overview
Bowtie 2 version 2.5.4 by Ben Langmead ([email protected], www.cs.jhu.edu/~langmea)
- <bt2_base>
-
bt2 filename minus trailing .1.bt2/.2.bt2
-
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With
-n, just prints names. With-s, just prints a summary of the index parameters and sequences.
Options
-
--large-index -
force inspection of the 'large' index, even if a 'small' one is present.
-
--debug -
use the debug binary; slower, assertions enabled
-
--verbose -
log the issued command
|
Number of characters across in FASTA output (default: 60) |
|---|---|
|
Print reference sequence names only |
|
Print summary incl. ref names, lengths, index properties |
|
Save output to filename (default stdout) |
|
Verbose output (for debugging) |
|
print this and message quit |
Releases
7 releases since Debian 7 (Wheezy); the text changed 6 times.
--debug since Debian 10 (Buster);
--large-index since Debian 9 (Stretch);
--verbose since Debian 10 (Buster).
--help until Debian 9 (Stretch);
--sanitized until Debian 10 (Buster).