NAME
bowtie2-inspect-l - extracts information from a bowtie2 index
SYNOPSIS
bowtie2-inspect [options]* <bt2_base>
DESCRIPTION
Bowtie 2 version 2.5.4 by Ben Langmead ([email protected], www.cs.jhu.edu/~langmea)
- <bt2_base>
-
bt2 filename minus trailing .1.bt2l/.2.bt2l
-
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences.
OPTIONS
- -a/--across <int>
-
Number of characters across in FASTA output (default: 60)
- -n/--names
-
Print reference sequence names only
- -s/--summary
-
Print summary incl. ref names, lengths, index properties
- -o/--output
-
Save output to filename (default stdout)
- -v/--verbose
-
Verbose output (for debugging)
- -h/--help
-
print this and message quit