bioawk(1)

bioawk1

Extension of awk for biological sequence analysis

Overview

bed:

1:chrom 2:start 3:end 4:name 5:score 6:strand 7:thickstart 8:thickend 9:rgb 10:blockcount 11:blocksizes 12:blockstarts

sam:

1:qname 2:flag 3:rname 4:pos 5:mapq 6:cigar 7:rnext 8:pnext 9:tlen 10:seq 11:qual

vcf:

1:chrom 2:pos 3:id 4:ref 5:alt 6:qual 7:filter 8:info

gff:

1:seqname 2:source 3:feature 4:start 5:end 6:score 7:filter 8:strand 9:group 10:attribute

fastx:

1:name 2:seq 3:qual 4:comment

Releases

Unchanged in 2 releases since Debian 12 (Bookworm).

  1. 12–13

Author

This manpage was written by Nilesh Patra for the Debian distribution and
can be used for any other usage of the program.

From bioawk 1.0-5 in Debian 13 (Trixie). Parsed by carta from the page's man source.