NAME
bedops-starch - manual page for bedops-starch 2.4.41+dfsg
DESCRIPTION
starch
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citation: http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract
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https://doi.org/10.1093/bioinformatics/bts277
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binary version: 2.4.41 (typical) (creates archive version: 2.2.0) authors: Alex Reynolds and Shane Neph
USAGE: starch [ --note="foo bar..." ]
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[ --bzip2 | --gzip ] [ --omit-signature ] [ --report-progress=N ] [ --header ] [ <unique-tag> ] <bed-file>
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* BED input must be sorted lexicographically (e.g., using BEDOPS sort-bed). * Please use '-' to indicate reading BED data from standard input. * Output must be directed to a regular file. * The bzip2 compression type makes smaller archives, while gzip extracts
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faster.
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Process Flags -------------------------------------------------------------------------- --note="foo bar..." Append note to output archive metadata (optional).
- --bzip2 | --gzip
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Specify backend compression type (optional, default is bzip2).
- --omit-signature
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Skip generating per-chromosome data integrity signature (optional, default is to generate signature).
- --report-progress=N
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Report compression progress every N elements per chromosome to standard error stream (optional)
- --header
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Support BED input with custom UCSC track, SAM or VCF headers, or generic comments (optional).
- <unique-tag>
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Optional. Specify unique identifier for transformed data.
- --version
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Show binary version.
- --help
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Show this usage message.
SEE ALSO
The full documentation for bedops-starch is maintained as a Texinfo manual. If the info and bedops-starch programs are properly installed at your site, the command
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info bedops-starch
should give you access to the complete manual.