---
name: "bed_to_juncs"
section: "1"
platform: "linux"
package: "tophat"
version: "2.1.1+dfsg1-2+b1"
release: "Debian 10 (Buster)"
platforms: ["linux"]
url: "https://new.carta.tech/bed_to_juncs"
---

# bed\_to\_juncs(1)

tophat component to convert junctions in BED format

## NAME

bed\_to\_juncs - tophat component to convert junctions in BED format

## DESCRIPTION

bed\_to\_juncs: This script converts junctions in BED format produced by TopHat to the internal .juncs format for re-use with future runs.

Usage:

-

  bed\_to\_juncs.py \< junctions.bed

-

  for help use **--help**