---
name: "bed2bed_display"
section: "1"
platform: "linux"
package: "chip-seq"
version: "1.5.5-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/bed2bed_display"
---

# bed2bed\_display(1)

Convert BED file to BED format suitable for displaying ChIP-seq peaks.

## NAME

bed2bed\_display - Convert BED file to BED format suitable for displaying ChIP-seq peaks.

## SYNOPSIS

**bed2bed\_display** \[*options*\] \[*-a \<min BED score\>*\] \[*-b \<max BED score\>*\] \[*\<*\] *\<BED file\|stdin\>*

## DESCRIPTION

-

  \- version 1.5.5 where options are:

- **-d**\|--debug

  Produce Debug information

- **-h**\|--help

  Show this Help text

- **-f**\|--feature \<ft\>

  Set Feature name \<ft\>

- **-o**\|--oformat \<1\|2\>

  Set output Format (1:BED\[Def\] 2:BedGraph)

- **--name** \<name\>

  Set name for track name field \[def. name=SGA-feature\]

- **--desc** \<desc\>

  Set track description field \[def. desc="ChIP-Seq Custom data"\]

- **--color** \<col\>

  Define the track color in comma-separated RGB values \[def. 100,100,100\]

- **--autoscale**

  \<on\|off\>     Data viewing paramenter: set auto-scale to UCSC data view \[def=OFF\]

- **--always0**

  \<on\|off\>     Data viewing paramenter: always include zero \[def=OFF\]

- **--wfunction**

  \<func\>       Data viewing paramenter: windowing function \[def=mean+whiskers\|maximum\|mean\|minimum\]

- **--smoothing**

  \<grade\>      Data viewing paramenter: smoothing window \[def=OFF\[0\], \<grade\>=0,2..16\]

- **--visibility** \<mode\>

  Display mode: \[def=dense\|full\|hide\] or \[def=1\|2\|3\]

-

  Convert BED file to BED format suitable for displaying ChIP-seq peaks. Two formats are supported: 1) BED Track with Score field; 2) BedGraph. For BED track format, only the graphical parameter 'visibility' can be set.

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.