beagle_cpu_EigenDecomposition3

Public Member Functions

EigenDecomposition (int decompositionCount, int stateCount, int categoryCount, long flags)

virtual void setEigenDecomposition (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)=0

virtual void updateTransitionMatrices (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count)=0

Protected Attributes

REALTYPE ** gEigenValues

int kStateCount

int kEigenDecompCount

int kCategoryCount

long kFlags

REALTYPE * matrixTmp

REALTYPE * firstDerivTmp

REALTYPE * secondDerivTmp