NAME
bamindex - create index for BAM file
SYNOPSIS
bamindex [options]
DESCRIPTION
bamindex reads a BAM file from standard input and produces a BAM index (.bai) file for this BAM file on standard output.
verbose=<1>: Valid values are
- 1:
-
print progress report on standard error
- 0:
-
do not print progress report
tmpfile=<filename>: set the prefix for temporary file names. By default temporary files are created in the current directory.
AUTHOR
Written by German Tischler.
REPORTING BUGS
Report bugs to <[email protected]>
COPYRIGHT
Copyright © 2009-2013 German Tischler, © 2011-2013 Genome Research Limited. License GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.