NAME
bam2bed_slurm - manual page for bam2bed_slurm 2.4.41+dfsg
SYNOPSIS
bam2bed_slurm [--help] [--clean] <input-indexed-bam-file> [output-bed-file]
DESCRIPTION
-
Pass in the name of an indexed BAM file to create a sorted BED file using the cluster.
-
(stdin isn't supported through this wrapper script.)
-
Add --clean to remove <input-indexed-bam-file> after turning it into BED.
-
You can pass in the name of the output bed archive to be created. Otherwise, the output will have the same name as the input file, with an additional
- '.bed' ending.
-
If the input file ends with '.bam', that will be stripped off.
SEE ALSO
The full documentation for bam2bed_slurm is maintained as a Texinfo manual. If the info and bam2bed_slurm programs are properly installed at your site, the command
-
info bam2bed_slurm
should give you access to the complete manual.