Reference

arrow(1)

HMM-based consensus caller for Pacific Biosciences data

NAME

arrow - HMM-based consensus caller for Pacific Biosciences data

DESCRIPTION

See genomicconsensus(7) for a more detailed description of arrow.

OPTIONS

-h, --help

Show summary of options.

SEE ALSO

genomicconsensus(7) variantCaller(1) blasr(1)

History

--help since Debian 3.1 (Sarge); -h since Debian 3.1 (Sarge).

--annotations until Debian 5.0 (Lenny); --append-stoplist-file until Debian 5.0 (Lenny); --binary-word-counts until Debian 5.0 (Lenny); --compare until Debian 5.0 (Lenny); --data-dir until Debian 5.0 (Lenny); --event-document-then-word-document-length until Debian 5.0 (Lenny); --event-model until Debian 5.0 (Lenny); --exclude-filename until Debian 5.0 (Lenny); --flex-mail until Debian 5.0 (Lenny); --flex-tagged until Debian 5.0 (Lenny); --gram-size until Debian 5.0 (Lenny); --index until Debian 5.0 (Lenny); --infogain-event-model until Debian 5.0 (Lenny); --istext-avoid-uuencode until Debian 5.0 (Lenny); --lex-alphanum until Debian 5.0 (Lenny); --lex-pipe-command until Debian 5.0 (Lenny); --lex-suffixing until Debian 5.0 (Lenny); --lex-white until Debian 5.0 (Lenny); --max-num-words-per-document until Debian 5.0 (Lenny); --method until Debian 5.0 (Lenny); --no-backspaces until Debian 5.0 (Lenny); --no-stemming until Debian 5.0 (Lenny); --no-stoplist until Debian 5.0 (Lenny); --num-hits-to-show until Debian 5.0 (Lenny); --print-coo until Debian 5.0 (Lenny); --print-idf until Debian 5.0 (Lenny); --print-word-scores until Debian 5.0 (Lenny); --prune-vocab-by-doc-count until Debian 5.0 (Lenny); --prune-vocab-by-infogain until Debian 5.0 (Lenny); --prune-vocab-by-occur-count until Debian 5.0 (Lenny); --query until Debian 5.0 (Lenny); --query-forking-server until Debian 5.0 (Lenny); --random-seed until Debian 5.0 (Lenny); --replace-stoplist-file until Debian 5.0 (Lenny); --score-precision until Debian 5.0 (Lenny); --skip-header until Debian 5.0 (Lenny); --skip-html until Debian 5.0 (Lenny); --smoothing-dirichlet-filename until Debian 5.0 (Lenny); --smoothing-dirichlet-weight until Debian 5.0 (Lenny); --smoothing-goodturing-k until Debian 5.0 (Lenny); --smoothing-method until Debian 5.0 (Lenny); --usage until Debian 5.0 (Lenny); --use-stemming until Debian 5.0 (Lenny); --use-stoplist until Debian 5.0 (Lenny); --use-unknown-word until Debian 5.0 (Lenny); --verbosity until Debian 5.0 (Lenny); --version until Debian 5.0 (Lenny); --xxx-words-only until Debian 5.0 (Lenny); -? until Debian 5.0 (Lenny); -D until Debian 5.0 (Lenny); -H until Debian 5.0 (Lenny); -O until Debian 5.0 (Lenny); -S until Debian 5.0 (Lenny); -T until Debian 5.0 (Lenny); -V until Debian 5.0 (Lenny); -b until Debian 5.0 (Lenny); -c until Debian 5.0 (Lenny); -d until Debian 5.0 (Lenny); -g until Debian 5.0 (Lenny); -i until Debian 5.0 (Lenny); -m until Debian 5.0 (Lenny); -n until Debian 5.0 (Lenny); -q until Debian 5.0 (Lenny); -s until Debian 5.0 (Lenny); -v until Debian 5.0 (Lenny).