NAME
alignment-info - Show useful statistics about the alignment.
SYNOPSIS
alignment-info alignment-file [tree-file] [OPTIONS]
DESCRIPTION
Show useful statistics about the alignment.
ALLOWED OPTIONS:
- -h, –help
-
produce help message
- –align arg
-
file with sequences and initial alignment
- –tree arg
-
file with initial tree
- –alphabet arg
-
specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons
- -e, –erase-empty-columns
-
Remove columns with no characters (all gaps).
- -N, –show-names
-
Print the sequence-names and exit
- -L, –show-lengths
-
Print the sequence-lengths and exit
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.