---
name: "alignment-find"
section: "1"
platform: "linux"
package: "bali-phy"
version: "4.0-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/alignment-find"
---

# alignment-find(1)

Find the last (or first) FASTA alignment in a file.

## NAME

**alignment-find** - Find the last (or first) FASTA alignment in a file.

## SYNOPSIS

**alignment-find** \[OPTIONS\] \< in-file

## DESCRIPTION

Find the last (or first) FASTA alignment in a file.

## ALLOWED OPTIONS:

- **-h**, **–help**

  produce help message

- **–alphabet** *arg*

  Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.

- **–first**

  get the first alignment in the file

- **–last**

  get the last alignment in the file (default)

## REPORTING BUGS:

BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\\c .

Please send bug reports to ⟨bali-phy-users@googlegroups.com⟩\\c .

## AUTHORS

Benjamin Redelings.