NAME
alignment-chop-internal - Remove ancestral sequences from an alignment.
SYNOPSIS
alignment-chop-internal [OPTIONS] < alignments-file
DESCRIPTION
Remove ancestral sequences from an alignment.
ALLOWED OPTIONS:
- -h, –help
-
produce help message
- –align arg
-
file with sequences and initial alignment
- –alphabet arg
-
set to `Codons' to prefer codon alphabets
- –tree arg
-
file with tree that specifies leaves to keep
- -N arg, –nleaves arg
-
number of sequences to keep
REPORTING BUGS:
BAli-Phy online help: ⟨http://www.bali-phy.org/docs.php⟩\c .
Please send bug reports to ⟨[email protected]⟩\c .
AUTHORS
Benjamin Redelings.