---
name: "align_dna"
section: "1"
platform: "linux"
package: "genomethreader"
version: "1.7.3+dfsg-10+b1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/align_dna"
---

# align\_dna(1)

spliced align genomic sequence with cDNA

## NAME

align\_dna - spliced align genomic sequence with cDNA

## SYNOPSIS

**align\_dna** \[option ...\] -datapath dir -bssmfile file

## OPTIONS

- **-genreverse**

  align reverse strand of genomic sequence default: no

- **-genrange**

  set aligned genomic range default: undefined

- **-help**

  display help and exit

- **-version**

  display version information and exit