TMscore1
An algorithm to calculate the similarity of topologies of two protein structures
Usage
1. Run
TM-score
to
compare
'model'
and
'native':
TMscore model
native
2. Run
TM-score
with
an
assigned
d0,
e.g.
5
Angstroms:
TMscore model
native
-d
5
TMscore model
native
-o
TM.sup
rasmol -script
TM.sup
Version
This documentation refers to TM-score version released on 2011/01/30
Overview
This program is to compare two protein structures and identify the best superposition that has the highest TM-score. Input structures must be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the program without arguments.
Options
-o filename.sup Outputs the superposition to the specified file,
suitable for use in rasmol.
-d value Sets d0 to the specified number of angstroms.