Reference

TFBS::PatternGen::Gibbs::Motif(3pm)

class for unprocessed motifs and associated numerical scores created by the Gibbs program

NAME

TFBS::PatternGen::Gibbs::Motif - class for unprocessed motifs and associated numerical scores created by the Gibbs program

SYNOPSIS

DESCRIPTION

TFBS::PatternGen::Gibbs::Motif is used to store and manipulate unprocessed motifs and associated numerical scores created by the Gibbs program. You do not normally want to create a TFBS::PatternGen::Gibbs::Motif yourself. They are created by running TFBS::PatternGen::Gibbs

FEEDBACK

Please send bug reports and other comments to the author.

AUTHOR - Boris Lenhard and Wynand Alkema

Boris Lenhard <[email protected]> Wynand Alkema <[email protected]>

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are preceded with an underscore.

MAP

 Title   : MAP
 Usage   : my $map_score = $motif->MAP;
 Function: returns MAP score for the detected motif
           (This is a backward compatibility method. For consistency,
            you should use $motif->tag('MAP_score') instead
 Returns : float (a scalar)
 Args    : none

Other methods

TFBS::PatterGen::Motif::Gibbs inherits from TFBS::PatternGen::Motif, which inherits from TFBS::Matrix. Please consult the documentation of those modules for additional available methods.

History