SWISS::CCcatalytic_activity(3pm)

Name

SWISS::CCcatalytic_activity

Description

SWISS::CCcofactor represents a comment on the topic 'CATALYTIC ACTIVITY' within a Swiss-Prot or TrEMBL entry as specified in the user manual http://www.expasy.org/sprot/userman.html . Comments on other topics are stored in other types of objects, such as SWISS::CC (see SWISS::CCs for more information).

Collectively, comments of all types are stored within a SWISS::CCs container object.

Inherits from

SWISS::BaseClass

Attributes

topic

The topic of this comment ('CATALYTIC ACTIVITY').

form

The protein form concerned by this comment (undef/empty = canonical/displayed form OR unknown)

comment

The "text" version of this comment (without evidences and new lines).

activity_rhea

The rhea id (e.g. RHEA:18037) of the reaction (only for new structured CC CATALYTIC ACTIVITY)

activity_rhea( $new_rhea_id, $new_optional_reaction_ev )

Set rhea activity to $new_rhea_id (and reaction ev to $new_optional_reaction_ev if provided) (only for new structured CC CATALYTIC ACTIVITY)

activity_reaction

The reaction txt (e.g. agmatine + H2O = N-carbamoylputrescine + NH4(+))

activity_reaction( $new_reaction_txt )

Set reaction txt to $new_reaction_txt (on old unstructured format: extra $ev could be added)

activity_ec

The reaction EC (e.g. 3.5.3.12)

activity_ec( $new_reaction_ec, , $new_optional_reaction_ev )

Set reaction EC to $new_reaction_ec (and reaction ev to $new_optional_reaction_ev if provided) (only for new structured CC CATALYTIC ACTIVITY)

activity_participant

The reaction participants as a String Array (e.g. [ "ChEBI:CHEBI:15377", "ChEBI:CHEBI:28938", "ChEBI:CHEBI:58145", "ChEBI:CHEBI:58318" ]) (participant are shown as dbtype:id e.g. in "ChEBI:CHEBI:15377" CheBI is db type, CHEBI:15377 is (CheBi) id) (only for new structured CC CATALYTIC ACTIVITY)

activity_participant( $new_participant_array )

Set reaction participants to $new_participant_array (array of strings) (only for new structured CC CATALYTIC ACTIVITY)

directions

The directions: Array of direction structures as hash e.g. [ { 'txt' => 'left-to-right', 'rhea' => 'RHEA:16846', 'ev' => '{ECO:0000269|PubMed:29420286}' } ] p.s. in well formed UniProtKB data 'txt' will be 'right-to-left' or 'left-to-right' (in that order); there should be no more than 2 directions (minimum: 0)

direction( $new_directions )

Set directions Array to $new_directions ... (only for new structured CC CATALYTIC ACTIVITY)

new

fromText

toString

Returns a string representation of this comment.

POD ERRORS

Hey! The above document had some coding errors, which are explained below:

Around line 293:

=back doesn't take any parameters, but you said =back =head1 Methods

Around line 347:

=back doesn't take any parameters, but you said =back =head2 Standard methods