---
name: "SURVIVOR"
section: "1"
platform: "linux"
package: "survivor"
version: "1.0.7-4"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/SURVIVOR"
---

# SURVIVOR(1)

\<short\_description\>

## NAME

SURVIVOR - \<short\_description\>

## SYNOPSIS

**SURVIVOR** *\<command\>* \[*options*\]

## DESCRIPTION

Program: SURVIVOR (Tools for Structural Variations in the VCF format) Version: 1.0.6

Commands: **--** Simulation/ Evaluation

- simSV

  Simulates SVs and SNPs on a reference genome.

- scanreads

  Obtain error profiles form mapped reads for simulation.

- simreads

  Simulates long reads (Pacio or ONT).

- eval

  Evaluates a VCF file after SV calling over simulated data.

**--** Comparison/filtering

- merge

  Compare or merge VCF files to generate a consensus or multi sample VCF files.

-

  genComp Generates a pairwise comparison matrix based on any multi sample VCF file filter  Filter a vcf file based on size and/or regions to ignore stats   Report multiple stats over a VCF file compMUMMer      Annotates a VCF file with the breakpoints found with MUMMer (Show-diff).

**--** Conversion

- bincov

  Bins coverage vector to a bed file to filter SVs in low MQ regions

- vcftobed

  Converts a VCF file to a bed file

- bedtovcf

  Converts a bed file to a VCF file

- smaptovcf

  Converts the smap file to a VCF file (beta version)

- bedpetovcf

  Converts a bedpe file to a VCF file (beta version)

- hapcuttovcf

  Converts the Hapcut2 final file to a VCF file using the original SNP file provided to Hapcut2

- convertAssemblytics

  Converts Assemblytics to a VCF file

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.